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Peer Reviewed Papers, Books, Chapters

Year Title Citation Authors
1. 2010 Precalculated Protein Structure Alignments at the RCSB PDB website Bioinformatics 2010;
2. 2010 Will widgets and semantic tagging change computational biology? PLoS Comput Biol. 2010 Feb 26;6(2)
3. 2010 The RCSB Protein Data Bank: redesigned web site and web services. Nucleic Acids Res. 2010 Oct 29.
4. 2010 Integration of open access literature into the RCSB Protein Data Bank Using BioLit. BMC Bioinformatics. 2010 Apr 29;11(1):220.
5. 2009 DASMI: exchanging, annotating and assessing molecular interaction data. Bioinformatics. 2009 May 15;25(10):1321-8
6. 2008 The Protein Feature Ontology: A Tool for the Unification of Protein Feature Annotations Bioinformatics. 2008 Dec 1;24(23):2767-72. Epub 2008 Oct 20
7. 2008 BioJava: an Open-Source Framework for Bioinformatics Bioinformatics 2008 24(18):2096-2097
8. 2008 Ensembl 2008 Nucleic Acids Res. Database Issue 2008
9. 2008 Integrating biological data - the Distributed Annotation System BMC Bioinformatics 2008, 9(Suppl 8):S3
10. 2007 Integrating sequence and structural biology with DAS BMC Bioinformatics 2007, 8:333
11. 2007 SISYPHUS - structural alignments for proteins with non-trivial relationships Nucleic Acid Research Database Issue 2007 D253-D259
12. 2007 Ensembl 2007. Nucleic Acids Res. Database Issue 2007
13. 2007 New tools and expanded data analysis capabilities at the protein structure prediction center Proteins: Structure, Function, and Bioinformatics; 2007;69 Suppl 8:19-26.
14. 2006 Ensembl 2006. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D556-61.
15. 2006 The Distributed Annotation System for Integration of Biological Data Data Integration in the Life Sciences: Third International Workshop, DILS 2006.
16. 2005 Adding some SPICE to DAS Bioinformatics. 2005 Volume 21, suppl_2 Pp. ii40-ii41
17. 2004 WILMA - platform for the annotation of protein sequences Bioinformatics. 2004 Jan 1;20(1):127-8.
18. 2001 Assessment of the CASP4 Fold Recognition Category. Proteins. 2001; 45 (S5): 55-67
19. 2000 Structure-derived substitution matrices for alignment of distantly related sequences. Protein Eng. 2000 Aug;13(8):545-50
20. 1993 Sustained performance of knowledge-based potentials in fold recognition. Proteins. 1999;37(S3):112-20


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