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Peer Reviewed Papers, Books, Chapters

Year Title Citation Authors Review type Summary Keywords File filename File mime type
1. 2010 Identification of novel substrates for the serine protease HTRA1 in the human RPE secretome Invest Ophthalmol Vis Sci. 2010 Mar 5
2. 2010 Census for Proteome Quantification Current Protocols, Mar. 2010
3. 2009 A computational approach to correct arginine-to-proline conversion in quantitative proteomics Nature Methods. 2009 Mar;6(3):184-5
4. 2008 Quantitative analysis of brain nuclear phosphoproteins identifies developmentally regulated phosphorylation events J Proteome Res. 2008 Nov;7(11):4743-55. Epub 2008 Sep 30
5. 2008 Quantitative proteomic analysis of primary neurons reveals diverse changes in synaptic protein content in fmr1 knockout mice PNAS 105, 15281-15286
6. 2008 Characterization of Global Yeast Quantitative Proteome Data Generated from the Wild-Type and Glucose Repression Saccharomyces cerevisiae Strains: The Comparison of Two Quantitative Methods J. Proteome Research, 7 (01), 266–275, 2008
7. 2008 The proteomes of human parotid and submandibular/sublingual gland salivas collected as the ductal secretions J. Proteome Resesearch10.1021/pr700764j, 2008
8. 2008 Motif-specific sampling of phosphoproteomes J Proteome Res. 2008 May ;7 (5):2140-50
9. 2008 Combining Protein-Based IMAC, Peptide-Based IMAC, and MudPIT for Efficient Phosphoproteomic Analysis J. Proteome Research, 7 (3), 1346–1351, 2008
10. 2008 Large-Scale Differential Proteome Analysis in Plasmodium falciparum under Drug Treatment Judith Helena Prieto, Sasa Koncarevic, Sung Kyu Park, John Yates, III and Katja Becker
11. 2008 A quantitative analysis software tool for mass spectrometry.based proteomics Nature Methods, Mar. 2008
12. 2007 Optimizing TiO2-based phosphopeptide enrichment for automated multidimensional liquid chromatography coupled to tandem mass spectrometry Analytical Chemistry, 2007
13. 2007 Quantification of the synaptosomal proteome of the rat cerebellum during post-natal development Genome Research 17:1378-1388, 2007
14. 2007 Quantitative Mass Spectrometry Identifies Insulin Signaling Targets in C. elegans Science 317, 660-663
15. 2007 Biophysical interaction of metal-phosphopeptides – a tool for large scale analysis of phosphorylated proteins Nature Biotechnology, submitted, 2007
16. 2007 Automatic Validation of Phosphopeptide Identifications from Tandem Mass Spectra Analytical Chemistry, 2007
17. 2007 Relative Quantification of Stable Isotope Labeled Peptides Using a Linear Ion Trap-Orbitrap Hybrid Mass Spectrometer, Analytical Chemistry, 2007
18. 2006 Central limit theorem as an approximation for intensity-based scoring function Analytical Chemistry 2006 Jan 1;78(1):89-95

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