3D Tissue Models

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Peer Reviewed Papers, Books, Chapters

Year Title Citation Authors
1. 2011 Opening the archives for state of the art tumour genetic research: sample processing for array-CGH using decalcified, formalin-fixed, paraffin-embedded tissue-derived DNA samples. BMC Res Notes. 2011 Jan 4;4:1.
2. 2011 Analysis of stromal cells in osteofibrous dysplasia and adamantinoma of long bones. Mod Pathol. 2011 Oct 7. doi: 10.1038/modpathol.2011.141. [Epub ahead of print]
3. 2011 Chromosome segregation errors as a cause of DNA damage and structural chromosome aberrations. Science. 2011 Sep 30;333(6051):1895-8.
4. 2011 Maternally inherited partial monosomy 9p (pter → p24.1) and partial trisomy 20p (pter → p12.1) characterized by microarray comparative genomic hybridization. Am J Med Genet A. 2011 Sep 21. doi: 10.1002/ajmg.a.34168. [Epub ahead of print]
5. 2011 Oncogenic functions of hMDMX in in vitro transformation of primary human fibroblasts and embryonic retinoblasts. Mol Cancer. 2011 Sep 12;10:111.
6. 2011 Maffucci syndrome: a genome-wide analysis using high resolution single nucleotide polymorphism and expression arrays on four cases. Genes Chromosomes Cancer. 2011 Sep;50(9):673-9. doi: 10.1002/gcc.20889. Epub 2011 May 16.
7. 2011 1q gain and CDT2 overexpression underlie an aggressive and highly proliferative form of Ewing sarcoma. Oncogene. 2011 Aug 8. doi: 10.1038/onc.2011.317. [Epub ahead of print]
8. 2011 Familial adenomatous polyposis-associated desmoids display significantly more genetic changes than sporadic desmoids. PLoS One. 2011;6(9):e24354. Epub 2011 Sep 9.
9. 2011 Secondary peripheral chondrosarcoma evolving from osteochondroma as a result of outgrowth of cells with functional EXT. Oncogene. 2011 Aug 1. doi: 10.1038/onc.2011.311. [Epub ahead of print]
10. 2011 Breakpoint characterization of large deletions in EXT1 or EXT2 in 10 multiple osteochondromas families. BMC Med Genet. 2011 Jun 26;12:85.
11. 2011 A short-term in vivo model for giant cell tumor of bone. BMC Cancer. 2011 Jun 13;11:241. doi: 10.1186/1471-2407-11-241.
12. 2011 Loss of p53 partially rescues embryonic development of Palb2 knockout mice but does not foster haploinsufficiency of Palb2 in tumour suppression. J Pathol. 2011 May;224(1):10-21. doi: 10.1002/path.2861. Epub 2011 Mar 14.
13. 2011 Chemotherapy-resistant osteosarcoma is highly susceptible to IL-15-activated allogeneic and autologous NK cells. Cancer Immunol Immunother. 2011 Apr;60(4):575-86. Epub 2011 Jan 15.
14. 2011 Tiling resolution array-CGH shows that somatic mosaic deletion of the EXT gene is causative in EXT gene mutation negative multiple osteochondromas patients. Hum Mutat. 2011 Feb;32(2):E2036-49. doi: 10.1002/humu.21423. Epub 2010 Dec 7.
15. 2011 Role of the transcription factor T (brachyury) in the pathogenesis of sporadic chordoma: a genetic and functional-based study. J Pathol. 2011 Feb;223(3):327-35. doi: 10.1002/path.2816. Epub 2010 Nov 24.
16. 2011 Genome-wide analysis of Ollier disease: Is it all in the genes? Orphanet J Rare Dis. 2011 Jan 14;6:2.
17. 2010 Tiling resolution array-CGH shows that somatic mosaic deletion of the EXT gene is causative in EXT gene mutation negative multiple osteochondromas patients. Hum Mutat. 2010 Dec 7. [Epub ahead of print]
18. 2010 Two distinct regions in 2q24.2-q24.3 associated with idiopathic epilepsy. Epilepsia. 2010 Dec;51(12):2457-60. doi: 10.1111/j.1528-1167.2010.02742.x. Epub 2010 Sep 30.
19. 2010 Small deletions but not methylation underlie CDKN2A/p16 loss of expression in conventional osteosarcoma. Genes Chromosomes Cancer. 2010 Dec;49(12):1095-103.
20. 2010 Array-based comparative genomic hybridisation analysis reveals recurrent chromosomal alterations in primary diffuse large B cell lymphoma of bone. J Clin Pathol. 2010 Dec;63(12):1095-100. Epub 2010 Oct 20.
21. 2010 No haploinsufficiency but loss of heterozygosity for EXT in multiple osteochondromas. Am J Pathol. 2010 Oct;177(4):1946-57. Epub 2010 Sep 2.
22. 2010 Kinome profiling of myxoid liposarcoma reveals NF-kappaB-pathway kinase activity and casein kinase II inhibition as a potential treatment option. Mol Cancer. 2010 Sep 23;9:257.
23. 2010 Heterogeneous and complex rearrangements of chromosome arm 6q in chondromyxoid fibroma: delineation of breakpoints and analysis of candidate target genes. Am J Pathol. 2010 Sep;177(3):1365-76. Epub 2010 Aug 9.
24. 2010 Evaluation of high-resolution microarray platforms for genomic profiling of bone tumours. BMC Res Notes. 2010 Aug 8;3:223.
25. 2010 Centriole movements in mammalian epithelial cells during cytokinesis. BMC Cell Biol. 2010 May 21;11:34.
26. 2010 Deletions encompassing 1q41q42.1 and clinical features of autosomal dominant Robinow syndrome. Clin Genet. 2010 Apr;77(4):404-7. Epub 2010 Jan 20. No abstract available.
27. 2010 Cutaneous anaplastic large cell lymphoma and peripheral T-cell lymphoma NOS show distinct chromosomal alterations and differential expression of chemokine receptors and apoptosis regulators. J Invest Dermatol. 2010 Feb;130(2):563-75. Epub 2009 Aug 27.
28. 2009 No genomic aberrations in Langerhans cell histiocytosis as assessed by diverse molecular technologies. Genes Chromosomes Cancer. 2009 Mar;48(3):239-49.
29. 2009 Presence of a high amount of stroma and downregulation of SMAD4 predict for worse survival for stage I-II colon cancer patients. Cell Oncol. 2009;31(3):169-78.
30. 2009 A balanced t(5;17) (p15;q22-23) in chondroblastoma: frequency of the re-arrangement and analysis of the candidate genes. BMC Cancer. 2009 Nov 10;9:393.
31. 2009 Osteosarcoma originates from mesenchymal stem cells in consequence of aneuploidization and genomic loss of Cdkn2. J Pathol. 2009 Nov;219(3):294-305.
32. 2009 Multiple genomic aberrations in a patient with mental retardation and hypogonadism: 45,X/46,X,psu dic(Y) karyotype, thyroid hormone receptor beta (THRB) mutation and heterozygosity for Wilson disease. Am J Med Genet A. 2009 Oct;149A(10):2231-5.
33. 2009 Human cardiomyocyte progenitor cell transplantation preserves long-term function of the infarcted mouse myocardium. Cardiovasc Res. 2009 Aug 1;83(3):527-35. Epub 2009 May 9.
34. 2009 LSAMP, a novel candidate tumor suppressor gene in human osteosarcomas, identified by array comparative genomic hybridization. Genes Chromosomes Cancer. 2009 Aug;48(8):679-93.
35. 2009 Cellular/intramuscular myxoma and grade I myxofibrosarcoma are characterized by distinct genetic alterations and specific composition of their extracellular matrix. J Cell Mol Med. 2009 Jul;13(7):1291-301. Epub 2009 Mar 13.
36. 2009 Genomic instability in giant cell tumor of bone. A study of 52 cases using DNA ploidy, relocalization FISH, and array-CGH analysis. Genes Chromosomes Cancer. 2009 Jun;48(6):468-79.
37. 2009 A homozygous deletion of a normal variation locus in a patient with hearing loss from non-consanguineous parents. J Med Genet. 2009 Jun;46(6):412-7. Epub 2009 Feb 25.
38. 2009 The NFATc2 gene is involved in a novel cloned translocation in a Ewing sarcoma variant that couples its function in immunology to oncology. Clin Cancer Res. 2009 Apr 1;15(7):2259-68. Epub 2009 Mar 24.
39. 2009 Oncogenomic analysis of mycosis fungoides reveals major differences with Sezary syndrome. Blood. 2009 Jan 1;113(1):127-36. Epub 2008 Oct 1.
40. 2009 BRCA2 heterozygosity delays cytokinesis in primary human fibroblasts. Cell Oncol. 2009;31(3):191-201.
41. 2009 Aberrant heparan sulfate proteoglycan localization, despite normal exostosin, in central chondrosarcoma. Am J Pathol. 2009 Mar;174(3):979-88. Epub 2009 Jan 29.
42. 2009 Long-term culture of primary human lymphoblastic leukemia cells in the absence of serum or hematopoietic growth factors. Exp Hematol. 2009 Mar;37(3):376-85. Epub 2009 Jan 9.
43. 2008 Genomic imbalances associated with mullerian aplasia. J Med Genet. 2008 Apr;45(4):228-32. Epub 2007 Nov 26.
44. 2008 Molecular and clinical characterization of de novo and familial cases with microduplication 3q29: guidelines for copy number variation case reporting. Cytogenet Genome Res. 2008;123(1-4):65-78. Epub 2009 Mar 11.
45. 2008 Genomic alterations and gene expression in primary diffuse large B-cell lymphomas of immune-privileged sites: the importance of apoptosis and immunomodulatory pathways. J Pathol. 2008 Oct;216(2):209-17.
46. 2008 Establishment and cytogenetic characterization of a human acute lymphoblastic leukemia cell line (ALL-VG) with ETV6/ABL1 rearrangement. Cancer Genet Cytogenet. 2008 Aug;185(1):37-42.
47. 2008 Novel and highly recurrent chromosomal alterations in Sézary syndrome. Cancer Res. 2008 Apr 15;68(8):2689-98.
48. 2008 Frequent deletion of the CDKN2A locus in chordoma: analysis of chromosomal imbalances using array comparative genomic hybridisation. Br J Cancer. 2008 Jan 29;98(2):434-42. Epub 2007 Dec 11.
49. 2007 Interstitial deletion of 6q without phenotypic effect. Am J Med Genet A. 2007 Jun 15;143A(12):1354-7.
50. 2007 EWSR1-CREB1 and EWSR1-ATF1 fusion genes in angiomatoid fibrous histiocytoma. Clin Cancer Res. 2007 Dec 15;13(24):7322-8.
51. 2007 Guidelines for molecular karyotyping in constitutional genetic diagnosis. Eur J Hum Genet. 2007 Nov;15(11):1105-14. Epub 2007 Jul 18. Review.
52. 2007 CT-guided, COBRA-FISH-assisted diagnosis of well-differentiated liposarcoma (inflammatory subtype) of the retroperitoneum. Histopathology. 2007 Sep;51(3):422-6. No abstract available.
53. 2007 Chromosome abnormalities in two patients with features of autosomal dominant Robinow syndrome. Am J Med Genet A. 2007 Aug 1;143A(15):1790-5. No abstract available.
54. 2007 Optimized amplification and fluorescent labeling of small cell samples for genomic array-CGH. Cytometry A. 2007 Aug;71(8):585-91.
55. 2007 Does parosteal liposarcoma differ from other atypical lipomatous tumors/well-differentiated liposarcomas? A molecular cytogenetic study using combined multicolor COBRA-FISH karyotyping and array-based comparative genomic hybridization. Cancer Genet Cytogenet. 2007 Jul 15;176(2):115-20.
56. 2007 Single nucleotide polymorphism array analysis of chromosomal instability patterns discriminates rectal adenomas from carcinomas. J Pathol. 2007 Jul;212(3):269-77.
57. 2007 Physical status of multiple human papillomavirus genotypes in flow-sorted cervical cancer cells. Cancer Genet Cytogenet. 2007 Jun;175(2):132-7.
58. 2007 Differences in telomerase expression by the CD1a+ cells in Langerhans cell histiocytosis reflect the diverse clinical presentation of the disease. J Pathol. 2007 Jun;212(2):188-97.
59. 2007 Ring chromosome formation as a novel escape mechanism in patients with inverted duplication and terminal deletion. Eur J Hum Genet. 2007 May;15(5):548-55. Epub 2007 Mar 7.
60. 2007 Diagnosis of genetic abnormalities in developmentally delayed patients: a new strategy combining MLPA and array-CGH. Am J Med Genet A. 2007 Mar 15;143(6):610-4. No abstract available.
61. 2007 The role of EXT1 in nonhereditary osteochondroma: identification of homozygous deletions. J Natl Cancer Inst. 2007 Mar 7;99(5):396-406.
62. 2007 High-resolution copy number analysis of paraffin-embedded archival tissue using SNP BeadArrays. Genome Res. 2007 Mar;17(3):368-76. Epub 2007 Jan 31.
63. 2007 Combined array-comparative genomic hybridization and single-nucleotide polymorphism-loss of heterozygosity analysis reveals complex genetic alterations in cervical cancer. BMC Genomics. 2007 Feb 20;8:53.
64. 2007 Gene-expression profiling and array-based CGH classify CD4+CD56+ hematodermic neoplasm and cutaneous myelomonocytic leukemia as distinct disease entities. Blood. 2007 Feb 15;109(4):1720-7. Epub 2006 Oct 26.
65. 2007 Sarcoma derived from cultured mesenchymal stem cells. Stem Cells. 2007 Feb;25(2):371-9. Epub 2006 Oct 12.
66. 2007 Detection and molecular cytogenetic characterization of a novel ring chromosome in a histological variant of Ewing sarcoma. Cancer Genet Cytogenet. 2007 Jan 1;172(1):12-22.
67. 2007 The carcinoma-stromal ratio of colon carcinoma is an independent factor for survival compared to lymph node status and tumor stage. Cell Oncol. 2007;29(5):387-98.
68. 2006 Chromosomal and microsatellite instability of adenocarcinomas and dysplastic lesions (DALM) in ulcerative colitis. Diagn Mol Pathol. 2006 Dec;15(4):216-22.
69. 2006 Clonal T- and natural killer-cell large granular lymphocyte proliferations in a single patient established by array-based comparative genomic hybridization analysis. Leukemia. 2006 Dec;20(12):2212-4. Epub 2006 Oct 26. No abstract available.
70. 2006 Peters Plus syndrome is caused by mutations in B3GALTL, a putative glycosyltransferase. Am J Hum Genet. 2006 Sep;79(3):562-6. Epub 2006 Jul 19. Erratum in: Am J Hum Genet. 2006 Nov;79(5):985.
71. 2006 A complex rearrangement on chromosome 22 affecting both homologues; haplo-insufficiency of the Cat eye syndrome region may have no clinical relevance. Hum Genet. 2006 Aug;120(1):77-84. Epub 2006 May 18.
72. 2006 Array-comparative genomic hybridization of central chondrosarcoma: identification of ribosomal protein S6 and cyclin-dependent kinase 4 as candidate target genes for genomic aberrations. Cancer. 2006 Jul 15;107(2):380-8.
73. 2006 Report of a del22q11 in a patient with Mayer-Rokitansky-Küster-Hauser (MRKH) anomaly and exclusion of WNT-4, RAR-gamma, and RXR-alpha as major genes determining MRKH anomaly in a study of 25 affected women. Am J Med Genet A. 2006 Jun 15;140(12):1339-42. No abstract available.
74. 2006 Genomic analysis of early adenocarcinoma of the esophagus or gastroesophageal junction: tumor progression is associated with alteration of 1q and 8p sequences. Genes Chromosomes Cancer. 2006 May;45(5):516-25.
75. 2006 Molecular cytogenetic characterization of four previously established and two newly established Ewing sarcoma cell lines. Cancer Genet Cytogenet. 2006 Apr 15;166(2):173-9.
76. 2006 Genomic array and expression analysis of frequent high-level amplifications in adenocarcinomas of the gastro-esophageal junction. Cancer Genet Cytogenet. 2006 Apr 15;166(2):157-62.
77. 2006 Hypoparathyroidism-retardation-dysmorphism syndrome in a girl: A new variant not caused by a TBCE mutation--clinical report and review. Am J Med Genet A. 2006 Mar 15;140(6):611-7. Review.
78. 2006 Array-based genomic analysis of screen-detected Gleason score 6 and 7 prostatic adenocarcinomas. Anticancer Res. 2006 Mar-Apr;26(2A):1193-200.
79. 2006 Local recurrence of myxofibrosarcoma is associated with increase in tumour grade and cytogenetic aberrations, suggesting a multistep tumour progression model. Mod Pathol. 2006 Mar;19(3):407-16.
80. 2006 Copy number variation in regions flanked (or unflanked) by duplicons among patients with developmental delay and/or congenital malformations; detection of reciprocal and partial Williams-Beuren duplications. Eur J Hum Genet. 2006 Feb;14(2):180-9.
81. 2006 Array-CGH detection of micro rearrangements in mentally retarded individuals: clinical significance of imbalances present both in affected children and normal parents. J Med Genet. 2006 Feb;43(2):180-6. Epub 2005 Jun 24.
82. 2006 Array-based comparative genomic hybridization analysis reveals recurrent chromosomal alterations and prognostic parameters in primary cutaneous large B-cell lymphoma. J Clin Oncol. 2006 Jan 10;24(2):296-305. Epub 2005 Dec 5.
83. 2006 Whole-genome array-CGH screening in undiagnosed syndromic patients: old syndromes revisited and new alterations. Cytogenet Genome Res. 2006;115(3-4):254-61.
84. 2006 A 17q21.31 microdeletion encompassing the MAPT gene in a mentally impaired patient. Cytogenet Genome Res. 2006;114(1):89-92.
85. 2006 COBRA: combined binary ratio labeling of nucleic-acid probes for multi-color fluorescence in situ hybridization karyotyping. Nat Protoc. 2006;1(1):264-75.
86. 2005 Distinct nuclear gene expression profiles in cells with mtDNA depletion and homoplasmic A3243G mutation. Mutat Res. 2005 Oct 15;578(1-2):43-52.
87. 2005 Rapid detection of genomic imbalances using micro-arrays consisting of pooled BACs covering all human chromosome arms. Nucleic Acids Res. 2005 Oct 12;33(18):e159.
88. 2005 Array CGH detection of a cryptic deletion in a complex chromosome rearrangement. Hum Genet. 2005 Apr;116(5):390-4. Epub 2005 Feb 22.
89. 2005 GJB2 mutations in hearing impairment: identification of a broad clinical spectrum for improved genetic counseling. Laryngoscope. 2005 Mar;115(3):461-5.
90. 2005 Insights from genomic microarrays into structural chromosome rearrangements. Am J Med Genet A. 2005 Jan 1;132A(1):36-40.
91. 2005 Expression analysis of candidate breast tumour suppressor genes on chromosome 16q. Breast Cancer Res. 2005;7(6):R998-1004. Epub 2005 Oct 18.
92. 2004 Primary synovial sarcoma of the heart: a cytogenetic and molecular genetic analysis combining RT-PCR and COBRA-FISH of a case with a complex karyotype. Mod Pathol. 2004 Nov;17(11):1434-9.
93. 2004 Positioning of cervical carcinoma and Burkitt lymphoma translocation breakpoints with respect to the human papillomavirus integration cluster in FRA8C at 8q24.13. Cancer Genet Cytogenet. 2004 Oct 1;154(1):1-9.
94. 2004 Cathepsin K is the principal protease in giant cell tumor of bone. Am J Pathol. 2004 Aug;165(2):593-600.
95. 2004 Multicolor fluorescence in situ hybridization analysis of a synovial sarcoma of the larynx with a t(X;18)(p11.2;q11.2) and trisomies 2 and 8. Cancer Genet Cytogenet. 2004 Aug;153(1):48-52.
96. 2004 Disruption of Drosophila Rad50 causes pupal lethality, the accumulation of DNA double-strand breaks and the induction of apoptosis in third instar larvae. DNA Repair (Amst). 2004 Jun 3;3(6):603-15.
97. 2004 A novel t(6;14)(q25-q27;q32) in acute myelocytic leukemia involves the BCL11B gene. Cancer Genet Cytogenet. 2004 Feb;149(1):72-6.
98. 2002 Real-time monitoring of rolling-circle amplification using a modified molecular beacon design. Nucleic Acids Res. 2002 Jul 15;30(14):e66.
99. 2002 Connexin 26 mutations in cases of sensorineural deafness in eastern Austria. Eur J Hum Genet. 2002 Jul;10(7):427-32.
100. 2002 Simultaneous mapping of human papillomavirus integration sites and molecular karyotyping in short-term cultures of cervical carcinomas by using 49-color combined binary ratio labeling fluorescence in situ hybridization. Cancer Genet Cytogenet. 2002 Apr 15;134(2):145-50.
101. 2001 A novel strategy for human papillomavirus detection and genotyping with SybrGreen and molecular beacon polymerase chain reaction. Am J Pathol. 2001 Nov;159(5):1651-60.
102. 2001 A Rett syndrome patient with a ring X chromosome: further evidence for skewing of X inactivation and heterogeneity in the aetiology of the disease. Eur J Hum Genet. 2001 Mar;9(3):171-7.
103. 2001 Simultaneous A8344G heteroplasmy and mitochondrial DNA copy number quantification in myoclonus epilepsy and ragged-red fibers (MERRF) syndrome by a multiplex molecular beacon based real-time fluorescence PCR. Nucleic Acids Res. 2001 Feb 1;29(3):E13.
104. 2000 [Incidence and distribution of t(12;21) in prognostic groups of pediatric acute lymphoblastic leukemia]. Orv Hetil. 2000 Jul 2;141(27):1495-500. Hungarian.
105. 2000 Simultaneous molecular karyotyping and mapping of viral DNA integration sites by 25-color COBRA-FISH. Genes Chromosomes Cancer. 2000 May;28(1):92-7.
106. 2000 Silent Philadelphia chromosome: a distinct developmental stage in a philadelphia chromosome-positive chronic myeloproliferation? Cancer Genet Cytogenet. 2000 Apr 1;118(1):14-9.
107. 1999 Recurrent integration of human papillomaviruses 16, 45, and 67 near translocation breakpoints in new cervical cancer cell lines. Cancer Res. 1999 Nov 1;59(21):5615-24.
108. 1998 Combined metaphase, interphase cytogenetic, and flow cytometric analysis of DNA content of pediatric acute lymphoblastic leukemia. Cytometry. 1998 Apr 15;34(2):87-94.
109. 1997 [Application of interphase cytogenetics for the determination of changes in the DNA content in acute childhood lymphoid leukemia]. Orv Hetil. 1997 Dec 7;138(49):3111-9. Hungarian.
110. 1997 Multiple tumor case: report and analysis of an autopsy case. Tumori. 1997 May-Jun;83(3):715-7.

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