3D Tissue Models

View Profile

Peer Reviewed Papers, Books, Chapters

Year Title Citation Authors Review type Summary Keywords File filename File mime type
1. 2010 individual-specific and allele-specific chromatin signatures in humans. Science 2010 Apr 9;328(5975):235-9. PMID: 20299549
2. 2010 High nucleosome occupancy is encoded at human regulatory sequences PLoS ONE 2010 Feb 9;5(2):e9129. PMID: 20161746 PMCID: PMC2817738
3. 2010 A map of open chromatin in human pancreatic islets. Nature Genetics 2010 Mar;42(3):255-9. PMID: 20118932
4. 2010 Nucleosome sequence preferences influence in vivo nucleosome organization Nature Structural and Molecular Biology Aug;17(8):918-20 PMID: 20683473
5. 2010 Allele-specific and heritable chromatin signatures in humans Hum Mol Genet. 2010 Sep 16. PMID: 20846943
6. 2010 Nucleoporins and transcription: new connections, new questions PLoS Genet. 2010 Feb 26;6(2):e1000861. PMID: 20195517
7. 2010 The Histone H3K36 Methyltransferase MES-4 Acts Epigenetically to Transmit the Memory of Germline Gene Expression to Progeny PLoS Genetics. 2010 Sep 2;6(9). pii: e1001091. PMID: 20824077
8. 2010 Analysis of the Basidiomycete Coprinopsis cinerea Reveals Conservation of the Core Meiotic Expression Program over Half a Billion Years of Evolution PLoS Genetics 6(9): e1001135. doi:10.1371/journal.pgen.1001135
9. 2010 An assessment of histone-modification antibody quality Nature Structural and Molecular Biology 2010 Dec 5. PMID: 21131980
10. 2010 C. elegans chromosome arms are anchored to the nuclear membrane via discontinuous association with LEM-2 Genome Biology. DOI:10.1186/gb-2010-11-12-r120
11. 2010 Contributions of DNA sequence preferences to Nucleosome organization: proposed definitions and methodology Genome Biology 2010 Nov 30;11(11):140. PMID: 21118582
12. 2009 Unlocking the secrets of the genome Nature. 2009 Jun 18;459(7249):927-30. PMID: 19560424
13. 2009 Isolation of active regulatory elements from eukaryotic chromatin using FAIRE (Formaldehyde Assisted Isolation of Regulatory Elements). Methods. 2009 Mar 18. PMID: 19303047
14. 2009 The C. elegans dosage compensation complex propagates dynamically and independently of X-chromosome sequence Current Biology 2009 17;19(21):1777-1787. PMID:19853451 PMC2783177
15. 2009 A positive but complex association between meiotic double-strand break hotspots and open chromatin in Saccharomyces cerevisiae Genome Research 2009 Dec;19(12):2245-57 PMID: 19801530, PMCID: 2792181
16. 2009 The DNA-binding specificity and in vivo targets of C. elegans Nuclear Factor I Proc Natl Acad Sci U S A. 2009 Jul 21;106(29):12049-54. PMID: 19584245 PMC: 2715542
17. 2009 Highly transcribed RNA polymerase II genes are major impediments to replication fork progression in Saccharomyces cerevisiae Molecular Cell 2009 Jun 26;34(6):722-34. PMID: 19560424, PMC Journal – In Process
18. 2009 Systematic identification of balanced translocation polymorphisms in Saccharomyces cerevisiae. PLoS Genetics 2009 Jun;5(6):e1000502. PMID: 19503594 PMCID: 2682701
19. 2009 Gene Expression Divergence in Yeast is Coupled to Evolution of DNA-Encoded Nucleosome Organization Nature Genetics 2009 41(4):438-45. PMID: 19252487, PMCID: 2744203
20. 2009 The DNA-encoded nucleosome organization of a eukaryotic genome Nature 2009 Mar 19;458(7236):362-6. PMID: 19092803 PMCID: PMC2658732
21. 2009 The Set2/Rpd3S pathway suppresses cryptic transcription without regard to gene length or transcription frequency PLoS ONE 2009 4(3):e4886. PMID: 19295910 PMCID: PMC2654109
22. 2009 C. elegans dosage compensation: A window into mechanisms of domain-scale gene regulation Chromosome Research 17(2):215-27. PMID: 19308702
23. 2008 The Genomic Distribution and Function of Histone Variant HTZ-1 during C. elegans Embryogenesis PLoS Genetics 2008 4(9):e1000187. PMID 18787694 PMC2522285
24. 2008 A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters Molecular Cell 2008 Dec 26;32(6):878-87. PMID: 19111667 PMC2743730
25. 2008 Chromatin proteins do double duty Cell. May 30;133(5):763-5
26. 2008 Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets Genome Research. 2008 18(3):393-403 PMID: 18258921 PMCID: PMC2259103
27. 2007 FAIRE (Formaldehyde Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin Genome Research. Jun;17(6):877-85. PMID: 17179217 PMCID: PMC1891346
28. 2007 Forkhead proteins control the outcome of transcription factor binding by antiactivation EMBO Journal. 2007 26, 4324–4334 PMID: 17898805, PMC2034669
29. 2007 X-chromosome repression by localization of the C. elegans dosage compensation machinery to sites of transcription initiation Nature Genetics. Mar;39(3):403-408 PMID: 17293863 PMC2753834
30. 2007 Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project Nature. Jun 14; 447: 799-816
31. 2007 Loss of a histone deacetylase dramatically alters the genomic distribution of Spo11p-catalyzed DNA breaks in Saccharomyces cerevisiae Proc Natl Acad Sci U S A. Mar; 104(10):3955-60. PMID: 17360459, PMCID: 1805699
32. 2007 Identification Of Histone H3 Lysine 36 Acetylation As A Highly Conserved Histone Modification Journal of Biological Chemistry. Mar 9;282(10):7632-40. PMID: 17189264, PMCID: 2811852
33. 2007 The RNA Pol II kinase Ctk1 regulates positioning of a 5' histone methylation boundary along genes Molecular and Cellular Biology. Jan; 27(2):721-31 PMID: 17088384, PMC1800795
34. 2006 How to Find an Opening (or Lots of Them) Nature Methods. 3(7) 501-502
35. 2006 A chromatin-mediated mechanism for specification of conditional transcription factor targets Nature Genetics. Dec; 38(12):1446-51. PMID: 17099712, PMC2756100
36. 2006 Whole-genome comparison of Leu3 binding in vitro and in vivo reveals the importance of nucleosome occupancy in target site selection Genome Research. Dec; 16(12): 1517-1528 PMID: 17053089, PMCID: 1665635
37. 2006 Cell-cycle specified fluctuation of nucleosome occupancy at gene promoters PLoS Genetics. Sep; 2(9): e158 PMID: 17002501, PMCID: 1570381
38. 2006 Global analysis of the relationship between the binding of the Bas1p transcription factor and meiosis-specific double-strand DNA breaks in Saccharomyces cerevisiae Molecular and Cellular Biology. 26(3):1014-27. PMID: 16428454, PMCID: 1347019
39. 2006 New evidence that DNA encodes its packaging Nature Genetics. 38(10):1104-5
40. 2006 Regulation of nucleosome stability as a mediator of chromatin function. Current Opinion in Genetics and Development.16:171–176
41. 2006 Applying whole-genome studies of epigenetic regulation to study human disease Cytogenetic and Genome Research. 114(1):1-15. PMC2734277
42. 2005 Control of Transcription through Intragenic Patterns of Nucleosome Composition Cell. Dec 29;123(7):1187-90.
43. 2005 DIP-chip: Rapid and accurate determination of DNA binding specificity Genome Research. 15(3): 421-427 PMID: 15710749, PMCID: 551568
44. 2005 Dimethylation of Histone H3 at Lysine 36 Demarcates Regulatory and Non-Regulatory Chromatin Genome-wide Molecular and Cellular Biology. 25(21):9447-59. PMID: 16227595 PMCID: 1265832
45. 2005 ChIPOTle: A User-Friendly Tool For The Analysis Of ChIP-chip Data Genome Biology. 6(11): R97. PMID: 16277752, PMCID: 1297653
46. 2005 Out With the Old, In With the New Nature Genetics. 37(10):1024-5.
47. 2004 Progress and Challenges in Profiling the Dynamics of Chromatin and Transcription Factor Binding with DNA Microarrays Current Opinion in Genetics and Development. 14:697–705
48. 2004 Evidence for nucleosome depletion at active regulatory regions genome-wide Nature Genetics. 36(8): 900-905.
49. 2004 ChIP-chip: Considerations for the Design, Analysis, and Application of Genome-wide Chromatin Immunoprecipitation Experiments Genomics. 83(3):349-360
50. 2003 Genomewide Demarcation of RNA Polymerase II Transcription Units Revealed by Physical Fractionation of Chromatin Proc Natl Acad Sci U S A. 100(11): 6364-6369. PMC164452
51. 2003 Genome-wide Mapping of Protein-DNA Interactions by Chromatin Immunoprecipitation and DNA Microarray Hybridization Chapter 8 of Functional Genomics: Methods and Protocols. pp. 99-110. Humana Press. Edited by Michael J. Brownstein and Arkady B. Khodursky
52. 2003 Integrating Regulatory Motif Discovery and Genome-wide Expression Analysis Proc Natl Acad Sci U S A. 100(6): 3339-3344. PMC152294
53. 2002 A Molecular Link between Gene-Specific and Chromosome-Wide Transcriptional Repression Genes and Development 16(7):796-805. PMC186330
54. 2001 Promoter-Specific Binding of Rap1 Revealed by Genome-wide Maps of Protein-DNA Association Nature Genetics 28(4):327-334
55. 2000 The Caenorhabditis elegans Dosage Compensation Machinery is Recruited to X-Chromosome DNA Attached to an Autosome Genetics 156: 1603-1621 PMC1461385
56. 1998 MIX-1: An Essential Component of the C. elegans Mitotic Machinery that Executes X-Chromosome Dosage Compensation Cell 92(2): 265-277
57. 1996 DPY-26, a link between dosage compensation and meiotic chromosome segregation in the nematode Science 274: 1732-1736
58. 1996 Sex-specific assembly of a dosage compensation complex on the nematode X chromosome Science 274: 1736-1739

About Us | Privacy Policy | Site Map | FAQs | Advertise With Us | Community
BiotechScienceNews.com promotes research and ranks life scientists working in the life science spectrum involving biotechnology,
drug discovery, genomics, microbiology, neuroscience, medicine, pharmacology, cell biology, and molecular biology.